Category Archives for "Interesting creatures"

Posts about cool and unusual creatures found in the world.

How Does Limulus Amebocyte Lysate Help You Live a Better Life?

Why Primitive Horseshoe Crabs are so Crucial and Handy Strategies to Help us Conserve them.

In this article, we’ll see how these horseshoe crabs have been used by traditional and modern cultures and learn a little bit about their biology and ecology. We’ll also see how horseshoe crab blood is used to make injections and other medical procedures safer for us. Read it on Medium.

Have You Gone Viral?

All the basic information you need to know about viruses that infect people.

What do you actually know about viruses?

Most people just know that viruses infect them and make them sick. So in these trying times with COVID-19, maybe it’s a good idea for us to all learn some basic viral biology.

There’s so much information out there about COVID-19 that I’m not going to say much about it. This article tells you about the main categories of viruses, how they reproduce, how they infect cells, their physical characteristics, and much more.

Let’s get started.

What are viruses?

Viruses are infectious particles.  We call them particles because they are not the same as cells and here’s why.

They lack any of the normal internal subcellular “machinery” that all other living organisms’ cells have. This includes the structures needed to make proteins or the proteins that are needed for independent metabolism and to make new copies of their nucleic acid genome.

Because of this, they fall into the category of what we call obligate intracellular parasites.  They can only reproduce inside a host cell.

Are they alive?

The perennial viral question.  It depends how you define life so some folks say yes and some say no.  As we stated above, they need to be inside a host cell to reproduce. No host cell available, no more viruses made.

But they do contain all the instructional material necessary to make new copies of themselves once inside a host.  So is that a form of life? You get to decide for yourself.

How big are viruses?

This is a very important question to answer.  Do you want to protect yourself from getting a viral infection? Then you need to either destroy or deactivate the viral particles or hide behind a barrier that the virus can’t penetrate.

To construct a viral barrier you need to make sure that the pore size is small enough to keep them from getting through it.  And know what CAN pass through it.

Viruses range in size from 20 nanometres (nm) up to about 250 nm. But what does that actually mean?  How can I “picture” that? Do you remember the microscope you used in high school Biology? Well, the smallest thing we can see with it is about 500 nm.

The width of a human hair is 80,000 to 100,00 nm wide.

The largest virus is around 250 nm. It would take about 300-400 of them stacked up on top of each other to equal the width of a single human hair!

And a few million of the 20 nm large viruses will fit on the head of a pin!

Now think for a moment about those face masks everyone is wearing these days to guard against COVID-19.  Do you think they can filter out something that small? Or even slow them down? Nope, they can’t. You can wear it if it makes you feel better to do so but it doesn’t serve any real purpose.

From Wikipedia “Surgical masks are not designed to protect the wearer from inhaling airborne bacteria or virus particles…” 

So let’s talk a bit about what makes a virus.

Viral structure

The general structure of most viruses is quite simple.  Their genome is a piece of DNA or RNA packaged inside a capsule made of proteins.  This structure is called the capsid.

Then, depending on what kind of virus it is, the capsid may be enclosed in a membranous structure called an envelope.

When there is an envelope, it usually contains additional molecules that protrude from the envelope.  Viruses like SARS or COVID-19 are called coronaviruses because the protruding molecules make them look like a sun with coronal flares.

The figure below is an electron microscope picture of typical SARS virus particles. You can see the protein molecules that stick out from the envelope quite nicely.

Typical coronavirus particles

CDC/Dr. Fred Murphy - This media comes from the Centers for Disease Control and Prevention’s Public Health Image Library (PHIL), with identification number #4814.

Kinds of Virus

Viruses were originally classified into 2 types, DNA viruses and RNA viruses. As we learned more, we discovered it wasn’t quite that simple!

By looking at their genomes and the proteins included in the capsid, modern viral taxonomy has distinguished 7 different classes of viruses.

This figure shows the 7 classes of viruses.  Here’s what the abbreviations mean if you’re curious but I’m not going to get into any detail about them in this article. Too technical!  ds is double-stranded, ss is single-stranded, (+) is the plus strand, (-) is the minus strand, RT is reverse transcriptase.

Viral structure

What do viruses look like? What are they made of?

In Biology, we call the appearance of an entity its morphology.  As an example, human morphology includes a trunk (abdomen and chest) supported on 2 legs which also has 2 arms that extend from it on either side.  And then there is a short tube at the top of the trunk that has another structure that has several openings and has 2 eyes, a nose and a mouth and 2 ears etc.  You get the idea. It can get very detailed! I barely started here.

This figure shows just how different the morphology for some of the 7 different types is.

The figure was taken from this article.

How do viruses infect their hosts and reproduce?

Again, I don’t want to get too technical here.  This is not a course to teach you everything about viruses but is a quick overview of what viruses are and how they do what they do.

Because different kinds of viruses infect all the other kinds of creatures on this planet, there is no one method of infection that they all use.  And even looking just at the ones that infect humans, there are a few different ways they do this.

One of the most common ways viruses infect humans is by essentially “merging” with the cells to enter them.  How did they come to be able to do that?

This is sort of a chicken and egg question because we don’t exactly know how viruses evolved this method.  What we do know is the ones that use this method have a membranous coating that they picked up from the last cell they invaded.

To best get the idea, let’s start with the virus already having entered the cell.  Enzymes inside the cell digest the envelope (if there is one) and the capsid, which releases the viral genomic nucleic acids (DNA or RNA). The genome contains the “instructions” to make the proteins that make more viral genomes. The viral genome is then “read” by the cell’s “machinery” that it uses to read its own genome and makes the proteins encoded in the viral genome.

These viral proteins now co-opt other parts of the subcellular “production line” and use them to manufacture more viral genomes, viral capsid proteins and envelope glycoproteins.

The capsid proteins then assemble and form new capsids around a strand of the new viral genome, one or two genomes per capsid.  At the same time, the cell transports the new viral envelope glycoproteins to its cellular membrane. The new genome-containing capsids are transported to the cell membrane where they bud out from the cell.  They surround themselves with the host cell membrane which also contains viral envelope proteins.

Here’s a nice figure to summarize all that information.

The figure was taken from this site

It turns out that these viral glycoproteins in the envelope actually bind to receptor molecules embedded in that particular type of cell’s membrane.  Let’s use our lung cells as an example. All the lung’s cells have that receptor molecule in and on their membranes.

The new viral particles’ envelopes bind to the same receptors present on other nearby cells and the cycle repeats over and over.  In some cases, the original host cell is killed but in others, it is not. Even if it is not killed, it is making new viral particles so it can’t perform the function it was originally designed for nearly as well, if at all. That plus the inflammatory response from the immune system is what causes the sickness or disease the creature suffers from. Especially when a high percentage of that particular cell type is infected.

Why are viruses specific to a particular host?

Let’s stay with the virus that infected our lungs. Its envelope only contains glycoproteins recognized by receptors on other lung cells.  It is not recognized by the liver, brain, kidney or any other tissue lacking the receptor. This is why viruses are so specific.  For example, the hepatitis virus only infects liver tissue cells and HIV only infects a specific kind of immune cell called a T cell. HIV kills this class of T cells which are a critical component of our immune system. The whole immune system is disabled without these T cells.

Some viruses can actually remain latent in the cell.  Herpes virus is one example. It actually makes copies of itself inside the cell nucleus. Then it buds from the nucleus with an envelope made from the nuclear membrane, not the cell’s outer membrane.  Some copies do not actually bud out of the nucleus but remain inside it as minichromosomes.

These minichromosomes stay inside the nucleus until some kind of stress signal activates them to open up and start producing more virus particles.  These particles then cause blisters such as cold sores or genital sores. And that’s why herpes infection is life-long. Some particles always remain behind just “waiting” to become active again!

What are other viral hosts?

Viruses are found in every other life form.  All the other creatures in the plant and animal kingdoms, and they also infect other microorganisms including bacteria and archaea, single-celled organisms that are not bacteria.

Viruses that infect bacteria are called bacteriophages. “The term comes from “bacteria” and the Greek φαγεῖν (phagein), meaning “to devour”. They are often referred to simply as phages.

Many early molecular biology studies used phage particles and their bacterial hosts as model systems to begin to understand basic molecular genetic and genomic biology.

 What else do I need to know?

I’ve covered all the basic biology of viruses you need to feel a bit more knowledgeable about them.

You know how small they are and the different parts that make a virus particle. You also know the different classes of viruses, how they infect humans, how they reproduce and the different organisms they use as hosts.

Any more information would start to get us into serious viral biology.

Note: I have specifically avoided talking about the COVID-19 coronavirus. Because there is so much information out there, I would just be repeating everything everyone else has already written about.

I hope you found this interesting and worth spending a few minutes of your time to read.

Until next time,

Rich

Hey! If you enjoyed this article then please subscribe to my newsletter to hear about my latest articles and grab my free ebook here.

What is the Intimate Connection Between Delicious Spot Prawns and Diseased Starfish?

Is the loss of starfish affecting the supply and price of our delicious spot prawns?

In this article, you’ll learn how the populations of both starfish and spot prawns also depend on 2 other species, sea urchins and kelp. And how the decline in the starfish population due to a wasting disease is affecting the supply of our spot prawns…More

It’s Turtles All the Way Down

And what they are saying about our current state of bio awareness and climate change

Given that so many cultures revere turtles and assigned to them so many positive virtues, you might think we would ensure that they are protected and encouraged to thrive.

As you’ll see in this article, that’s not the case at all. Turtle populations are shrinking and some species are becoming extinct.

Why is that happening? And why are we letting it happen?

I look at turtles and their biology to see what they are “telling us” these days about the state of this planet we call home…More

The American Burying Beetle: A Success Story?

Were they ever really endangered?

Almost 2 years ago, Scientific American published an article by Hannah Nordhaus entitled “Beetle Resurrection” that made the American Burying Beetle (Necrophorus americanus) a poster child for how the oil industry and other political and economic interests regarded an endangered species that most Americans didn’t know about and previously never cared about in the first place.

As is often the case, there was a rash of articles, posts and blogs in all the top media outlets talking about the American Burying Beetle and then it was business as usual and the issue seemed to disappear.

Or was it and did it?…More